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Software for Motif Searches - Nucleic Acid
  • dreg - Search a nucleic acid sequence using regular expressions (part of the EMBOSS package)
  • fuzznuc - Search a nucleic acid sequence using PROSITE style patterns (part of the EMBOSS package)
  • fuzztran - Search a nucleic acid sequence, after translating in the specified frame(s), using PROSITE style patterns (part of the EMBOSS package)
  • marscan - Find matrix attachment region (MAR) and scaffold attachment region (SAR) sites in nucleic acid sequences (part of the EMBOSS package)
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