Home → Our Services → Software → Sequence Alignment - Multiple

• ClustalW - Multiple sequence alignment for DNA or proteins.
• emma - Interface to the ClustalW program (part of the EMBOSS package)
• infoalign - Information on a multiple sequence alignment (part of the EMBOSS package)
• MUSCLE (MUltiple Sequence Comparison by Log-Expectation) - Multiple sequence alignment for proteins
• plotcon - Plot the quality of conservation of a sequence alignment (part of the EMBOSS package)
• prettyplot - Display aligned sequences with coloring and boxing (part of the EMBOSS package)
• showalign - Display a multiple sequence alignment (part of the EMBOSS package)
• tranalign - Align nucleic acid coding regions given the aligned proteins (part of the EMBOSS package)