Home → Our Services → Software → Sequence Composition - Nucleic Acid

• banana - Predict and plot bending of a normal B-DNA double helix (part of the EMBOSS package)
• btwisted - Calculate the twisting in a B-DNA sequence (part of the EMBOSS package)
• cai - Calculate the Codon Adaptation Index (CAI), a simple, effective measure of synonymous codon usage bias (part of the EMBOSS package)
• chaos - Create a chaos game representation plot for a sequence (part of the EMBOSS package)
• chips - Calculate codon usage statistics (part of the EMBOSS package)
• codcomp - Creates a table of codon usage comparisons (part of the EMBOSS package)
• compseq - Count composition of dimer, trimer and other words in a sequence (part of the EMBOSS package)
• cpgplot - Plot CpG rich regions (part of the EMBOSS package)
• cpgreport - Report all CpG rich regions (part of the EMBOSS package)
• cusp - Create a codon usage table (part of the EMBOSS package)
• dan - Calculate DNA or RNA melting temperature (part of the EMBOSS package)
• einverted - Find DNA inverted repeats (part of the EMBOSS package)
• equicktandem - Find tandem repeats (part of the EMBOSS package)
• etandem - Look for tandem repeats in a nucleotide sequence (part of the EMBOSS package)
• freak - Create a residue or base frequency table or plot (part of the EMBOSS package)
• geecee - Calculate fractional GC content of nucleic acid sequences (part of the EMBOSS package)
• isochore - Plot isochores in large DNA sequences (part of the EMBOSS package)
• newcpgreport - Report CpG rich regions (part of the EMBOSS package)
• newcpgseek - Report CpG rich regions (part of the EMBOSS package)
• palindrome - Look for inverted repeats in a nucleotide sequence (part of the EMBOSS package)
• sirna - Find siRNA duplexes in mRNA (part of the EMBOSS package)
• syco - Synonymous codon usage Gribskov statistic plot (part of the EMBOSS package)
• wordcount - Count words of a specified size in a DNA sequence (part of the EMBOSS package)